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Sharing standardized image-derived data in computational pathology using DICOM

Published 16 Sept 2026arXiv:2609.14530

data quality89

Updated 7 h ago · first seen 15 Sept 2026

paper_01M2JK0CN34RW41V65ZTQSGMHC

Abstract

Development and evaluation of computational pathology methods require access to large and diverse datasets. Over the past decade, various initiatives invested significantly into collecting, centralizing, and sharing pathology imaging data. In contrast, sharing of image-derived data such as region-of-interest delineations or segmentation masks is less well developed. In this work, we describe our approach to encoding and sharing image-derived pathology data in a standardized manner within the National Cancer Institute (NCI) Imaging Data Commons (IDC), a platform that hosts and provides public access to de-identified radiology and pathology data. The IDC relies on the Digital Imaging and Communications in Medicine (DICOM) standard for data harmonization, yet the adoption of DICOM for pathology image-derived content has remained largely unexplored until now. Here, we present five representative datasets harmonized by conversion from their original representations into DICOM and shared publicly in the IDC. We demonstrate the benefits of this harmonization, describe contributions to critical open-source tooling, and discuss technical considerations relevant to broader adoption of DICOM for pathology image-derived data.

Authors

Authors 28

Andr\'e Homeyer (Fraunhofer Institute for Digital Medicine MEVISAndrey Fedorov (Harvard Medical SchoolBangorBethesdaBostonBremenChristopher P. Bridge (Athinoula A. Martinos Center for Biomedical ImagingCurtis Lisle (National Institute of AllergyDaniela P. Schacherer (Fraunhofer Institute for Digital Medicine MEVISDavid Clunie (PixelMed PublishingErlangenGermany)Henning Hoefener (Fraunhofer Institute for Digital Medicine MEVISIgor Octaviano (Radical Imaging LLCInfectious DiseasesJoel Saltz (Stony Brook UniversityKenneth Philbrick (Google ResearchMarkus D. Herrmann (Harvard Medical SchoolMarkus Metzler (University Hospital ErlangenMassachusetts General HospitalMountain ViewOlivier Gevaert (Stanford UniversityStanfordStony BrookTabita Ghete (University Hospital ErlangenTahsin Kurc (Stony Brook UniversityUSA)Yuanning Zheng (Stanford University

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arXiv (Atom API + RSS)rss.arxiv.org/rss/cs.CV feedT1· Official7 h ago4
arXiv (Atom API + RSS)rss.arxiv.org/rss/cs.AI feedT1· Official7 h ago5
arXiv (Atom API + RSS)rss.arxiv.org/rss/cs.LG feedT1· Official7 h ago4

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