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Representation learning of human cortical folding to reveal long lasting neurodevelopmental signatures

arxiv.org/abs/2609.05438

quality89

Updated 2 h ago · first seen 11 Sept 2026

paper_01M294FTKDWYM2GBT9S5BGSMGD

Published
11 Sept 2026
T1 · 2 h ago
arXiv
2609.05438
T1 · 2 h ago
Category
q-bio.QM
T1 · 2 h ago

Abstract

-cross Abstract: The human brain folds in utero, primarily during late gestation. Shortly after birth, cortical folding patterns are established and remain stable thereafter, making them promising early neurodevelopmental markers. Yet it is unclear whether the representations given by current neuroimaging foundation models capture cortical folding variability. Here, we introduce Champollion, a self-supervised learning framework that learns interpretable local representations of cortical folding from structural MRI. Optimized on representative folding-related tasks, Champollion accurately captures known folding patterns across cortical regions and external datasets. In a comprehensive benchmark, it consistently outperforms neuroimaging and general-purpose foundation models. Furthermore, Champollion reveals richer genetic associations than conventional morphometric descriptors and identifies localized folding signatures associated with incomplete hippocampal inversion, prematurity, and maternal smoking. These results establish cortical folding as a rich and largely untapped source of neurodevelopmental information, and Champollion provides a unified framework for discovering, localizing and interpreting long lasting cortical folding signatures.

Authors 27

Julien Laval, Robin Guiavarch, Antoine Dufournet, Racim Menasria, Barth\'el\'emy Drabczuk, Cristobal Mendoza, Saeb Tounsi, Chikh Abdelghani Baroud, Merieme Bourenane, Vanessa Troiani, William Snyder, Marisa A Patti, Myl\`ene Moyal, Marion Plaze, Arnaud Cachia, Federica Santacroce, Giorgia Committeri, Claire Cury, Kevin De Matos, Olivier Colliot, Zhong Yi Sun, Clara Fischer, Vincent Frouin, Pietro Gori, Denis Rivi\`ere, Jo\"el Chavas, Jean-Fran\c{c}ois Mangin

Specification

Official page

Source:arXiv (Atom API + RSS)T1observed 2 h agohigh

Arxiv announce type
replace

Source:arXiv (Atom API + RSS)T1observed 2 h agohigh

arXiv id
2609.05438

Source:arXiv (Atom API + RSS)T1observed 2 h agohigh

Categories
q-bio.QM, cs.CV, cs.LG

Source:arXiv (Atom API + RSS)T1observed 2 h agohigh

PDF

Source:arXiv (Atom API + RSS)T1observed 2 h agohigh

Primary category
q-bio.QM

Source:arXiv (Atom API + RSS)T1observed 2 h agohigh

Published
11 Sept 2026

Source:arXiv (Atom API + RSS)T1observed 2 h agohigh

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Provenance

Attributed facts

9

Source tiers

T19

Freshest observation

2 h ago

Conflicts

None